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<FONT color="green">001</FONT>    package edu.hawaii.myisern.model;<a name="line.1"></a>
<FONT color="green">002</FONT>    <a name="line.2"></a>
<FONT color="green">003</FONT>    import static org.junit.Assert.assertEquals;<a name="line.3"></a>
<FONT color="green">004</FONT>    import static org.junit.Assert.assertTrue;<a name="line.4"></a>
<FONT color="green">005</FONT>    import static org.junit.Assert.fail;<a name="line.5"></a>
<FONT color="green">006</FONT>    import java.io.IOException;<a name="line.6"></a>
<FONT color="green">007</FONT>    import java.math.BigInteger;<a name="line.7"></a>
<FONT color="green">008</FONT>    import java.util.List;<a name="line.8"></a>
<FONT color="green">009</FONT>    import java.util.Map;<a name="line.9"></a>
<FONT color="green">010</FONT>    import java.util.Set;<a name="line.10"></a>
<FONT color="green">011</FONT>    import javax.xml.bind.JAXBException;<a name="line.11"></a>
<FONT color="green">012</FONT>    import org.junit.Before;<a name="line.12"></a>
<FONT color="green">013</FONT>    import org.junit.Test;<a name="line.13"></a>
<FONT color="green">014</FONT>    <a name="line.14"></a>
<FONT color="green">015</FONT>    import edu.hawaii.myisern.collaborations.jaxb.Collaboration;<a name="line.15"></a>
<FONT color="green">016</FONT>    import edu.hawaii.myisern.collaborations.jaxb.Years;<a name="line.16"></a>
<FONT color="green">017</FONT>    import edu.hawaii.myisern.organizations.jaxb.Organization;<a name="line.17"></a>
<FONT color="green">018</FONT>    import edu.hawaii.myisern.researchers.jaxb.Researcher;<a name="line.18"></a>
<FONT color="green">019</FONT>    <a name="line.19"></a>
<FONT color="green">020</FONT>    import edu.hawaii.myisern.model.IsernModel.CollabLevelCompare;<a name="line.20"></a>
<FONT color="green">021</FONT>    /**<a name="line.21"></a>
<FONT color="green">022</FONT>     * A test class showing the possible design of the class we'd like to<a name="line.22"></a>
<FONT color="green">023</FONT>     * use to store our data.<a name="line.23"></a>
<FONT color="green">024</FONT>     * Taken from first brown project, modified for purple.<a name="line.24"></a>
<FONT color="green">025</FONT>     * <a name="line.25"></a>
<FONT color="green">026</FONT>     * @author Brian Jaress<a name="line.26"></a>
<FONT color="green">027</FONT>     * @author Kevin English<a name="line.27"></a>
<FONT color="green">028</FONT>     */<a name="line.28"></a>
<FONT color="green">029</FONT>    public class TestIsernModel {<a name="line.29"></a>
<FONT color="green">030</FONT>    <a name="line.30"></a>
<FONT color="green">031</FONT>      private static final String COLLABORATIONS_TEST_XML = "collaborations.test.xml";<a name="line.31"></a>
<FONT color="green">032</FONT>      private static final String ORGANIZATIONS_TEST_XML = "organizations.test.xml";<a name="line.32"></a>
<FONT color="green">033</FONT>      private static final String RESEARCHERS_TEST_XML = "researchers.test.xml";<a name="line.33"></a>
<FONT color="green">034</FONT>      private static final String FAKE_NAME = "Fake Name";<a name="line.34"></a>
<FONT color="green">035</FONT>      private static final String EXPECTED_EXCEPTION = "Didn't throw expected exception";<a name="line.35"></a>
<FONT color="green">036</FONT>    <a name="line.36"></a>
<FONT color="green">037</FONT>    <a name="line.37"></a>
<FONT color="green">038</FONT>      // IDs from the sample data<a name="line.38"></a>
<FONT color="green">039</FONT>      private static final Id COLLAB_ID = new Id("UM-UH-HPCS");<a name="line.39"></a>
<FONT color="green">040</FONT>      private static final Id ORG_ID = new Id("University_of_Hawaii");<a name="line.40"></a>
<FONT color="green">041</FONT>      private static final Id RESEARCHER_ID = new Id("Philip_Johnson");<a name="line.41"></a>
<FONT color="green">042</FONT>    <a name="line.42"></a>
<FONT color="green">043</FONT>      /**<a name="line.43"></a>
<FONT color="green">044</FONT>       * A test model to be filled with correct data for testing queries.<a name="line.44"></a>
<FONT color="green">045</FONT>       */<a name="line.45"></a>
<FONT color="green">046</FONT>      public IsernModel model;<a name="line.46"></a>
<FONT color="green">047</FONT>    <a name="line.47"></a>
<FONT color="green">048</FONT>      private final String xmlDir;<a name="line.48"></a>
<FONT color="green">049</FONT>    <a name="line.49"></a>
<FONT color="green">050</FONT>      /**<a name="line.50"></a>
<FONT color="green">051</FONT>       * Creates a test suite for IsernModel.<a name="line.51"></a>
<FONT color="green">052</FONT>       */<a name="line.52"></a>
<FONT color="green">053</FONT>      public TestIsernModel() {<a name="line.53"></a>
<FONT color="green">054</FONT>        this.xmlDir = System.getProperty("user.dir") + "/xml/examples";<a name="line.54"></a>
<FONT color="green">055</FONT>      }<a name="line.55"></a>
<FONT color="green">056</FONT>    <a name="line.56"></a>
<FONT color="green">057</FONT>      /**<a name="line.57"></a>
<FONT color="green">058</FONT>       * Prepare a model from the sample data.<a name="line.58"></a>
<FONT color="green">059</FONT>       * <a name="line.59"></a>
<FONT color="green">060</FONT>       * @throws IOException on bad data<a name="line.60"></a>
<FONT color="green">061</FONT>       * @throws JAXBException if a parser cannot be created<a name="line.61"></a>
<FONT color="green">062</FONT>       */<a name="line.62"></a>
<FONT color="green">063</FONT>      @Before<a name="line.63"></a>
<FONT color="green">064</FONT>      public void prepareModel() throws JAXBException, IOException {<a name="line.64"></a>
<FONT color="green">065</FONT>        this.model = new IsernModel();<a name="line.65"></a>
<FONT color="green">066</FONT>        model.setPath(xmlDir);<a name="line.66"></a>
<FONT color="green">067</FONT>        this.model.setCollaborationsFile(COLLABORATIONS_TEST_XML);<a name="line.67"></a>
<FONT color="green">068</FONT>        this.model.setResearchersFile( RESEARCHERS_TEST_XML);<a name="line.68"></a>
<FONT color="green">069</FONT>        this.model.setOrganizationsFile(ORGANIZATIONS_TEST_XML);<a name="line.69"></a>
<FONT color="green">070</FONT>        this.model.load();<a name="line.70"></a>
<FONT color="green">071</FONT>      }<a name="line.71"></a>
<FONT color="green">072</FONT>    <a name="line.72"></a>
<FONT color="green">073</FONT>      /**<a name="line.73"></a>
<FONT color="green">074</FONT>       * Checks the overall consistency and spot-checks the completeness of<a name="line.74"></a>
<FONT color="green">075</FONT>       * the loaded data.<a name="line.75"></a>
<FONT color="green">076</FONT>       */<a name="line.76"></a>
<FONT color="green">077</FONT>      @Test<a name="line.77"></a>
<FONT color="green">078</FONT>      public void testDataLoaded() {<a name="line.78"></a>
<FONT color="green">079</FONT>        Set&lt;Id&gt; ids = model.getIds();<a name="line.79"></a>
<FONT color="green">080</FONT>        assertTrue("A researcher ID", ids.contains(RESEARCHER_ID));<a name="line.80"></a>
<FONT color="green">081</FONT>        assertTrue("An organization ID", ids.contains(ORG_ID));<a name="line.81"></a>
<FONT color="green">082</FONT>        assertTrue("A collaboration ID", ids.contains(COLLAB_ID));<a name="line.82"></a>
<FONT color="green">083</FONT>      }<a name="line.83"></a>
<FONT color="green">084</FONT>    <a name="line.84"></a>
<FONT color="green">085</FONT>      /**<a name="line.85"></a>
<FONT color="green">086</FONT>       * Test queries that return researchers.<a name="line.86"></a>
<FONT color="green">087</FONT>       */<a name="line.87"></a>
<FONT color="green">088</FONT>      @Test<a name="line.88"></a>
<FONT color="green">089</FONT>      public void testResearcherQuery() {<a name="line.89"></a>
<FONT color="green">090</FONT>        // map for getting all researchers or one by ID<a name="line.90"></a>
<FONT color="green">091</FONT>        Map&lt;Id, Researcher&gt; researchers = this.model.getResearchers();<a name="line.91"></a>
<FONT color="green">092</FONT>        assertTrue("Researcher ID", researchers.containsKey(RESEARCHER_ID));<a name="line.92"></a>
<FONT color="green">093</FONT>        Researcher r = researchers.get(RESEARCHER_ID);<a name="line.93"></a>
<FONT color="green">094</FONT>        assertEquals("Researcher name", r.getName(), "Philip Johnson");<a name="line.94"></a>
<FONT color="green">095</FONT>      }<a name="line.95"></a>
<FONT color="green">096</FONT>    <a name="line.96"></a>
<FONT color="green">097</FONT>      /**<a name="line.97"></a>
<FONT color="green">098</FONT>       * Test queries that return organizations.<a name="line.98"></a>
<FONT color="green">099</FONT>       */<a name="line.99"></a>
<FONT color="green">100</FONT>      @Test<a name="line.100"></a>
<FONT color="green">101</FONT>      public void testOrganizationQueries() {<a name="line.101"></a>
<FONT color="green">102</FONT>        // map for getting all organizations or one by ID<a name="line.102"></a>
<FONT color="green">103</FONT>        Map&lt;Id, Organization&gt; orgs = this.model.getOrganizations();<a name="line.103"></a>
<FONT color="green">104</FONT>        assertTrue("Org ID", orgs.containsKey(ORG_ID));<a name="line.104"></a>
<FONT color="green">105</FONT>        Organization o = orgs.get(ORG_ID);<a name="line.105"></a>
<FONT color="green">106</FONT>        assertEquals("Org name", o.getName(), "University of Hawaii");<a name="line.106"></a>
<FONT color="green">107</FONT>    <a name="line.107"></a>
<FONT color="green">108</FONT>        // queries<a name="line.108"></a>
<FONT color="green">109</FONT>        orgs = this.model.getOrganizationsByCollaborationLevel(<a name="line.109"></a>
<FONT color="green">110</FONT>            CollabLevelCompare.EQUAL, 1);<a name="line.110"></a>
<FONT color="green">111</FONT>        assertEquals("A single collaboration between two orgs", 2, orgs<a name="line.111"></a>
<FONT color="green">112</FONT>            .size());<a name="line.112"></a>
<FONT color="green">113</FONT>        assertTrue("Organization involved in collaboration", orgs<a name="line.113"></a>
<FONT color="green">114</FONT>            .containsKey(ORG_ID));<a name="line.114"></a>
<FONT color="green">115</FONT>        orgs = this.model.getOrganizationsByCollaborationLevel(<a name="line.115"></a>
<FONT color="green">116</FONT>            CollabLevelCompare.GREATER, 1);<a name="line.116"></a>
<FONT color="green">117</FONT>        assertTrue("No orgs with more than one collaboration", orgs<a name="line.117"></a>
<FONT color="green">118</FONT>            .isEmpty());<a name="line.118"></a>
<FONT color="green">119</FONT>      }<a name="line.119"></a>
<FONT color="green">120</FONT>    <a name="line.120"></a>
<FONT color="green">121</FONT>      /**<a name="line.121"></a>
<FONT color="green">122</FONT>       * Test queries that return collaborations.<a name="line.122"></a>
<FONT color="green">123</FONT>       */<a name="line.123"></a>
<FONT color="green">124</FONT>      @Test<a name="line.124"></a>
<FONT color="green">125</FONT>      public void testCollaborations() {<a name="line.125"></a>
<FONT color="green">126</FONT>        // map for getting all collaborations or one by ID<a name="line.126"></a>
<FONT color="green">127</FONT>        Map&lt;Id, Collaboration&gt; collabs = this.model.getCollaborations();<a name="line.127"></a>
<FONT color="green">128</FONT>        assertTrue("Collab ID", collabs.containsKey(COLLAB_ID));<a name="line.128"></a>
<FONT color="green">129</FONT>        Collaboration c = collabs.get(COLLAB_ID);<a name="line.129"></a>
<FONT color="green">130</FONT>        assertEquals("Collab name", c.getName(), COLLAB_ID.toString());<a name="line.130"></a>
<FONT color="green">131</FONT>    <a name="line.131"></a>
<FONT color="green">132</FONT>        // queries<a name="line.132"></a>
<FONT color="green">133</FONT>    //    collabs = this.model.getCollaborationsByOrganization(ORG_ID);<a name="line.133"></a>
<FONT color="green">134</FONT>    //    assertEquals("One collaboration for the organization", 1, collabs<a name="line.134"></a>
<FONT color="green">135</FONT>    //        .size());<a name="line.135"></a>
<FONT color="green">136</FONT>    //    collabs = this.model.getCollaborationsByOrganization(NON_ID);<a name="line.136"></a>
<FONT color="green">137</FONT>    //    assertTrue("No collaborations", collabs.isEmpty());<a name="line.137"></a>
<FONT color="green">138</FONT>    //<a name="line.138"></a>
<FONT color="green">139</FONT>    //    collabs = this.model.getCollaborationsByYear(2005);<a name="line.139"></a>
<FONT color="green">140</FONT>    //    assertEquals("One collaboration in 2005", 1, collabs.size());<a name="line.140"></a>
<FONT color="green">141</FONT>    //    collabs = this.model.getCollaborationsByYear(1776);<a name="line.141"></a>
<FONT color="green">142</FONT>    //    assertTrue("No collaborations in 1776", collabs.isEmpty());<a name="line.142"></a>
<FONT color="green">143</FONT>    //<a name="line.143"></a>
<FONT color="green">144</FONT>    //    collabs = this.model.getCollaborationsByResearcher(RESEARCHER_ID);<a name="line.144"></a>
<FONT color="green">145</FONT>    //    assertEquals("One collaboration in 2005", 1, collabs.size());<a name="line.145"></a>
<FONT color="green">146</FONT>    //    collabs = this.model.getCollaborationsByResearcher(NON_ID);<a name="line.146"></a>
<FONT color="green">147</FONT>    //    assertTrue("No collaborations", collabs.isEmpty());<a name="line.147"></a>
<FONT color="green">148</FONT>      }<a name="line.148"></a>
<FONT color="green">149</FONT>    <a name="line.149"></a>
<FONT color="green">150</FONT>      /**<a name="line.150"></a>
<FONT color="green">151</FONT>       * Test loading from a single file which is expected to fail.<a name="line.151"></a>
<FONT color="green">152</FONT>       * <a name="line.152"></a>
<FONT color="green">153</FONT>       * @param filePath the file path, which should contain the type of<a name="line.153"></a>
<FONT color="green">154</FONT>       * data in the file (e.g. "researchers.xml")<a name="line.154"></a>
<FONT color="green">155</FONT>       * @throws JAXBException on parser error<a name="line.155"></a>
<FONT color="green">156</FONT>       * @throws IOException if input or output fails<a name="line.156"></a>
<FONT color="green">157</FONT>       */<a name="line.157"></a>
<FONT color="green">158</FONT>      private void badFileLoad(String filePath) throws JAXBException,<a name="line.158"></a>
<FONT color="green">159</FONT>          IOException {<a name="line.159"></a>
<FONT color="green">160</FONT>        IsernModel badModel = new IsernModel();<a name="line.160"></a>
<FONT color="green">161</FONT>        badModel.setPath(xmlDir);<a name="line.161"></a>
<FONT color="green">162</FONT>        badModel.setResearchersFile(RESEARCHERS_TEST_XML);<a name="line.162"></a>
<FONT color="green">163</FONT>        badModel.setOrganizationsFile(ORGANIZATIONS_TEST_XML);<a name="line.163"></a>
<FONT color="green">164</FONT>        badModel.setCollaborationsFile(COLLABORATIONS_TEST_XML);<a name="line.164"></a>
<FONT color="green">165</FONT>        if (filePath.contains("researchers")) {<a name="line.165"></a>
<FONT color="green">166</FONT>          badModel.setResearchersFile(filePath);<a name="line.166"></a>
<FONT color="green">167</FONT>        }<a name="line.167"></a>
<FONT color="green">168</FONT>        else if (filePath.contains("organizations")) {<a name="line.168"></a>
<FONT color="green">169</FONT>          badModel.setOrganizationsFile(filePath);<a name="line.169"></a>
<FONT color="green">170</FONT>        }<a name="line.170"></a>
<FONT color="green">171</FONT>        else if (filePath.contains("collaborations")) {<a name="line.171"></a>
<FONT color="green">172</FONT>          badModel.setCollaborationsFile(filePath);<a name="line.172"></a>
<FONT color="green">173</FONT>        }<a name="line.173"></a>
<FONT color="green">174</FONT>        badModel.load();<a name="line.174"></a>
<FONT color="green">175</FONT>      }<a name="line.175"></a>
<FONT color="green">176</FONT>    <a name="line.176"></a>
<FONT color="green">177</FONT>      /**<a name="line.177"></a>
<FONT color="green">178</FONT>       * Check that an exception is thrown on loading blank researcher names<a name="line.178"></a>
<FONT color="green">179</FONT>       * <a name="line.179"></a>
<FONT color="green">180</FONT>       * @throws IOException on bad input<a name="line.180"></a>
<FONT color="green">181</FONT>       * @throws JAXBException if a parser cannot be created<a name="line.181"></a>
<FONT color="green">182</FONT>       */<a name="line.182"></a>
<FONT color="green">183</FONT>      @Test(expected = IOException.class)<a name="line.183"></a>
<FONT color="green">184</FONT>      public void testBlankNameResearchers() throws JAXBException,<a name="line.184"></a>
<FONT color="green">185</FONT>          IOException {<a name="line.185"></a>
<FONT color="green">186</FONT>        badFileLoad("researchers.blank-names.bad.xml");<a name="line.186"></a>
<FONT color="green">187</FONT>        fail(EXPECTED_EXCEPTION);<a name="line.187"></a>
<FONT color="green">188</FONT>      }<a name="line.188"></a>
<FONT color="green">189</FONT>    <a name="line.189"></a>
<FONT color="green">190</FONT>      /**<a name="line.190"></a>
<FONT color="green">191</FONT>       * Check that an exception is thrown on loading blank organization<a name="line.191"></a>
<FONT color="green">192</FONT>       * names<a name="line.192"></a>
<FONT color="green">193</FONT>       * <a name="line.193"></a>
<FONT color="green">194</FONT>       * @throws IOException on bad input<a name="line.194"></a>
<FONT color="green">195</FONT>       * @throws JAXBException if a parser cannot be created<a name="line.195"></a>
<FONT color="green">196</FONT>       */<a name="line.196"></a>
<FONT color="green">197</FONT>      @Test(expected = IOException.class)<a name="line.197"></a>
<FONT color="green">198</FONT>      public void testBlankNameOrganizations() throws JAXBException,<a name="line.198"></a>
<FONT color="green">199</FONT>          IOException {<a name="line.199"></a>
<FONT color="green">200</FONT>        badFileLoad("organizations.blank-names.bad.xml");<a name="line.200"></a>
<FONT color="green">201</FONT>        fail(EXPECTED_EXCEPTION);<a name="line.201"></a>
<FONT color="green">202</FONT>      }<a name="line.202"></a>
<FONT color="green">203</FONT>    <a name="line.203"></a>
<FONT color="green">204</FONT>      /**<a name="line.204"></a>
<FONT color="green">205</FONT>       * Check that an exception is thrown on loading blank collaboration<a name="line.205"></a>
<FONT color="green">206</FONT>       * names<a name="line.206"></a>
<FONT color="green">207</FONT>       * <a name="line.207"></a>
<FONT color="green">208</FONT>       * @throws IOException on bad input<a name="line.208"></a>
<FONT color="green">209</FONT>       * @throws JAXBException if a parser cannot be created<a name="line.209"></a>
<FONT color="green">210</FONT>       */<a name="line.210"></a>
<FONT color="green">211</FONT>      @Test(expected = IOException.class)<a name="line.211"></a>
<FONT color="green">212</FONT>      public void testBlankNameCollaborations() throws JAXBException,<a name="line.212"></a>
<FONT color="green">213</FONT>          IOException {<a name="line.213"></a>
<FONT color="green">214</FONT>        badFileLoad("collaborations.blank-names.bad.xml");<a name="line.214"></a>
<FONT color="green">215</FONT>        fail(EXPECTED_EXCEPTION);<a name="line.215"></a>
<FONT color="green">216</FONT>      }<a name="line.216"></a>
<FONT color="green">217</FONT>    <a name="line.217"></a>
<FONT color="green">218</FONT>      /**<a name="line.218"></a>
<FONT color="green">219</FONT>       * Check that an exception is thrown on loading duplicate researcher<a name="line.219"></a>
<FONT color="green">220</FONT>       * names<a name="line.220"></a>
<FONT color="green">221</FONT>       * <a name="line.221"></a>
<FONT color="green">222</FONT>       * @throws IOException on bad input<a name="line.222"></a>
<FONT color="green">223</FONT>       * @throws JAXBException if a parser cannot be created<a name="line.223"></a>
<FONT color="green">224</FONT>       */<a name="line.224"></a>
<FONT color="green">225</FONT>      @Test(expected = IOException.class)<a name="line.225"></a>
<FONT color="green">226</FONT>      public void testDuplicateResearcherName() throws JAXBException,<a name="line.226"></a>
<FONT color="green">227</FONT>          IOException {<a name="line.227"></a>
<FONT color="green">228</FONT>        badFileLoad("researchers.duplicate-names.bad.xml");<a name="line.228"></a>
<FONT color="green">229</FONT>        fail(EXPECTED_EXCEPTION);<a name="line.229"></a>
<FONT color="green">230</FONT>      }<a name="line.230"></a>
<FONT color="green">231</FONT>    <a name="line.231"></a>
<FONT color="green">232</FONT>      /**<a name="line.232"></a>
<FONT color="green">233</FONT>       * Check that an exception is thrown on loading duplicate organization<a name="line.233"></a>
<FONT color="green">234</FONT>       * names<a name="line.234"></a>
<FONT color="green">235</FONT>       * <a name="line.235"></a>
<FONT color="green">236</FONT>       * @throws IOException on bad input<a name="line.236"></a>
<FONT color="green">237</FONT>       * @throws JAXBException if a parser cannot be created<a name="line.237"></a>
<FONT color="green">238</FONT>       */<a name="line.238"></a>
<FONT color="green">239</FONT>      @Test(expected = IOException.class)<a name="line.239"></a>
<FONT color="green">240</FONT>      public void testDuplicateOrganizationName() throws JAXBException,<a name="line.240"></a>
<FONT color="green">241</FONT>          IOException {<a name="line.241"></a>
<FONT color="green">242</FONT>        badFileLoad("organizations.duplicate-names.bad.xml");<a name="line.242"></a>
<FONT color="green">243</FONT>        fail(EXPECTED_EXCEPTION);<a name="line.243"></a>
<FONT color="green">244</FONT>      }<a name="line.244"></a>
<FONT color="green">245</FONT>    <a name="line.245"></a>
<FONT color="green">246</FONT>      /**<a name="line.246"></a>
<FONT color="green">247</FONT>       * Check that an exception is thrown on loading duplicate<a name="line.247"></a>
<FONT color="green">248</FONT>       * collaboration names<a name="line.248"></a>
<FONT color="green">249</FONT>       * <a name="line.249"></a>
<FONT color="green">250</FONT>       * @throws IOException on bad input<a name="line.250"></a>
<FONT color="green">251</FONT>       * @throws JAXBException if a parser cannot be created<a name="line.251"></a>
<FONT color="green">252</FONT>       */<a name="line.252"></a>
<FONT color="green">253</FONT>      @Test(expected = IOException.class)<a name="line.253"></a>
<FONT color="green">254</FONT>      public void testDuplicateCollaborationName() throws JAXBException,<a name="line.254"></a>
<FONT color="green">255</FONT>          IOException {<a name="line.255"></a>
<FONT color="green">256</FONT>        badFileLoad("collaborations.duplicate-names.bad.xml");<a name="line.256"></a>
<FONT color="green">257</FONT>        fail(EXPECTED_EXCEPTION);<a name="line.257"></a>
<FONT color="green">258</FONT>      }<a name="line.258"></a>
<FONT color="green">259</FONT>    <a name="line.259"></a>
<FONT color="green">260</FONT>      /**<a name="line.260"></a>
<FONT color="green">261</FONT>       * Check that an exception is thrown on loading years that are too far<a name="line.261"></a>
<FONT color="green">262</FONT>       * in the future.<a name="line.262"></a>
<FONT color="green">263</FONT>       * <a name="line.263"></a>
<FONT color="green">264</FONT>       * @throws IOException on bad input<a name="line.264"></a>
<FONT color="green">265</FONT>       * @throws JAXBException if a parser cannot be created<a name="line.265"></a>
<FONT color="green">266</FONT>       */<a name="line.266"></a>
<FONT color="green">267</FONT>      @Test(expected = IOException.class)<a name="line.267"></a>
<FONT color="green">268</FONT>      public void testYearTooBig() throws JAXBException, IOException {<a name="line.268"></a>
<FONT color="green">269</FONT>        badFileLoad("collaborations.big-year.bad.xml");<a name="line.269"></a>
<FONT color="green">270</FONT>        fail(EXPECTED_EXCEPTION);<a name="line.270"></a>
<FONT color="green">271</FONT>      }<a name="line.271"></a>
<FONT color="green">272</FONT>    <a name="line.272"></a>
<FONT color="green">273</FONT>      /**<a name="line.273"></a>
<FONT color="green">274</FONT>       * Check that an exception is thrown on loading years that are too far<a name="line.274"></a>
<FONT color="green">275</FONT>       * in the past.<a name="line.275"></a>
<FONT color="green">276</FONT>       * <a name="line.276"></a>
<FONT color="green">277</FONT>       * @throws IOException on bad input<a name="line.277"></a>
<FONT color="green">278</FONT>       * @throws JAXBException if a parser cannot be created<a name="line.278"></a>
<FONT color="green">279</FONT>       */<a name="line.279"></a>
<FONT color="green">280</FONT>      @Test(expected = IOException.class)<a name="line.280"></a>
<FONT color="green">281</FONT>      public void testYearTooSmall() throws JAXBException, IOException {<a name="line.281"></a>
<FONT color="green">282</FONT>        badFileLoad("collaborations.small-year.bad.xml");<a name="line.282"></a>
<FONT color="green">283</FONT>        fail(EXPECTED_EXCEPTION);<a name="line.283"></a>
<FONT color="green">284</FONT>      }<a name="line.284"></a>
<FONT color="green">285</FONT>    <a name="line.285"></a>
<FONT color="green">286</FONT>      /**<a name="line.286"></a>
<FONT color="green">287</FONT>       * Test adding a researcher.<a name="line.287"></a>
<FONT color="green">288</FONT>       * <a name="line.288"></a>
<FONT color="green">289</FONT>       * @throws IOException on duplicate ID<a name="line.289"></a>
<FONT color="green">290</FONT>       */<a name="line.290"></a>
<FONT color="green">291</FONT>      @Test<a name="line.291"></a>
<FONT color="green">292</FONT>      public void testAddResearcher() throws IOException {<a name="line.292"></a>
<FONT color="green">293</FONT>        Researcher r = new Researcher();<a name="line.293"></a>
<FONT color="green">294</FONT>        r.setName(FAKE_NAME);<a name="line.294"></a>
<FONT color="green">295</FONT>        this.model.addResearcher(r);<a name="line.295"></a>
<FONT color="green">296</FONT>        assertTrue("Inserted Researcher", this.model.getResearchers()<a name="line.296"></a>
<FONT color="green">297</FONT>            .containsValue(r));<a name="line.297"></a>
<FONT color="green">298</FONT>      }<a name="line.298"></a>
<FONT color="green">299</FONT>    <a name="line.299"></a>
<FONT color="green">300</FONT>      /**<a name="line.300"></a>
<FONT color="green">301</FONT>       * Test adding an organization<a name="line.301"></a>
<FONT color="green">302</FONT>       * <a name="line.302"></a>
<FONT color="green">303</FONT>       * @throws IOException on duplicate ID<a name="line.303"></a>
<FONT color="green">304</FONT>       */<a name="line.304"></a>
<FONT color="green">305</FONT>      @Test<a name="line.305"></a>
<FONT color="green">306</FONT>      public void testAddOrganization() throws IOException {<a name="line.306"></a>
<FONT color="green">307</FONT>        Organization o = new Organization();<a name="line.307"></a>
<FONT color="green">308</FONT>        o.setName(FAKE_NAME);<a name="line.308"></a>
<FONT color="green">309</FONT>        this.model.addOrganization(o);<a name="line.309"></a>
<FONT color="green">310</FONT>        assertTrue("Inserted Organization", this.model.getOrganizations()<a name="line.310"></a>
<FONT color="green">311</FONT>            .containsValue(o));<a name="line.311"></a>
<FONT color="green">312</FONT>      }<a name="line.312"></a>
<FONT color="green">313</FONT>    <a name="line.313"></a>
<FONT color="green">314</FONT>      /**<a name="line.314"></a>
<FONT color="green">315</FONT>       * Test adding a collaboration<a name="line.315"></a>
<FONT color="green">316</FONT>       * <a name="line.316"></a>
<FONT color="green">317</FONT>       * @throws IOException on duplicate ID<a name="line.317"></a>
<FONT color="green">318</FONT>       */<a name="line.318"></a>
<FONT color="green">319</FONT>      @Test<a name="line.319"></a>
<FONT color="green">320</FONT>      public void testAddCollaboration() throws IOException {<a name="line.320"></a>
<FONT color="green">321</FONT>        Collaboration c = new Collaboration();<a name="line.321"></a>
<FONT color="green">322</FONT>        c.setName(FAKE_NAME);<a name="line.322"></a>
<FONT color="green">323</FONT>        Years y = new Years();<a name="line.323"></a>
<FONT color="green">324</FONT>        y.getYear().add(BigInteger.valueOf(2007));<a name="line.324"></a>
<FONT color="green">325</FONT>        c.setYears(new Years());<a name="line.325"></a>
<FONT color="green">326</FONT>        this.model.addCollaboration(c);<a name="line.326"></a>
<FONT color="green">327</FONT>        assertTrue("Inserted Collaboration", this.model.getCollaborations()<a name="line.327"></a>
<FONT color="green">328</FONT>            .containsValue(c));<a name="line.328"></a>
<FONT color="green">329</FONT>      }<a name="line.329"></a>
<FONT color="green">330</FONT>    <a name="line.330"></a>
<FONT color="green">331</FONT>      /**<a name="line.331"></a>
<FONT color="green">332</FONT>       * Test saving data to files and reloading.<a name="line.332"></a>
<FONT color="green">333</FONT>       * <a name="line.333"></a>
<FONT color="green">334</FONT>       * @throws IOException on save error<a name="line.334"></a>
<FONT color="green">335</FONT>       * @throws JAXBException if a parser cannot be created<a name="line.335"></a>
<FONT color="green">336</FONT>       */<a name="line.336"></a>
<FONT color="green">337</FONT>      @Test<a name="line.337"></a>
<FONT color="green">338</FONT>      public void testSave() throws IOException, JAXBException {<a name="line.338"></a>
<FONT color="green">339</FONT>        this.model.setPath(this.xmlDir);<a name="line.339"></a>
<FONT color="green">340</FONT>        this.model.setResearchersFile("researchers.save.xml");<a name="line.340"></a>
<FONT color="green">341</FONT>        this.model.setOrganizationsFile("organizations.save.xml");<a name="line.341"></a>
<FONT color="green">342</FONT>        this.model.setCollaborationsFile("collaborations.save.xml");<a name="line.342"></a>
<FONT color="green">343</FONT>        this.model.save();<a name="line.343"></a>
<FONT color="green">344</FONT>    <a name="line.344"></a>
<FONT color="green">345</FONT>        IsernModel reloaded = new IsernModel();<a name="line.345"></a>
<FONT color="green">346</FONT>        reloaded.setPath(this.xmlDir) ;<a name="line.346"></a>
<FONT color="green">347</FONT>        reloaded.setCollaborationsFile("collaborations.save.xml");<a name="line.347"></a>
<FONT color="green">348</FONT>        reloaded.setOrganizationsFile("organizations.save.xml");<a name="line.348"></a>
<FONT color="green">349</FONT>        reloaded.setResearchersFile("researchers.save.xml");<a name="line.349"></a>
<FONT color="green">350</FONT>        reloaded.load();<a name="line.350"></a>
<FONT color="green">351</FONT>    <a name="line.351"></a>
<FONT color="green">352</FONT>        assertEquals("Same contents on reload", model.getIds(), reloaded<a name="line.352"></a>
<FONT color="green">353</FONT>            .getIds());<a name="line.353"></a>
<FONT color="green">354</FONT>    <a name="line.354"></a>
<FONT color="green">355</FONT>        this.model.getResearchers().get(RESEARCHER_ID).setBioStatement(<a name="line.355"></a>
<FONT color="green">356</FONT>            RESEARCHER_ID.toString());<a name="line.356"></a>
<FONT color="green">357</FONT>        this.model.getOrganizations().get(ORG_ID).setResearchDescription(<a name="line.357"></a>
<FONT color="green">358</FONT>            ORG_ID.toString());<a name="line.358"></a>
<FONT color="green">359</FONT>        this.model.getCollaborations().get(COLLAB_ID).setDescription(<a name="line.359"></a>
<FONT color="green">360</FONT>            COLLAB_ID.toString());<a name="line.360"></a>
<FONT color="green">361</FONT>    <a name="line.361"></a>
<FONT color="green">362</FONT>        this.model.save();<a name="line.362"></a>
<FONT color="green">363</FONT>        reloaded.load();<a name="line.363"></a>
<FONT color="green">364</FONT>    <a name="line.364"></a>
<FONT color="green">365</FONT>        assertEquals("Edited researcher", reloaded.getResearchers().get(<a name="line.365"></a>
<FONT color="green">366</FONT>            RESEARCHER_ID).getBioStatement(), (RESEARCHER_ID.toString()));<a name="line.366"></a>
<FONT color="green">367</FONT>        assertEquals("Editted org", reloaded.getOrganizations().get(ORG_ID)<a name="line.367"></a>
<FONT color="green">368</FONT>            .getResearchDescription(), (ORG_ID.toString()));<a name="line.368"></a>
<FONT color="green">369</FONT>        assertEquals("Edited collab", reloaded.getCollaborations().get(<a name="line.369"></a>
<FONT color="green">370</FONT>            COLLAB_ID).getDescription(), (COLLAB_ID.toString()));<a name="line.370"></a>
<FONT color="green">371</FONT>      }<a name="line.371"></a>
<FONT color="green">372</FONT>    <a name="line.372"></a>
<FONT color="green">373</FONT>      /**<a name="line.373"></a>
<FONT color="green">374</FONT>       * Check that we can get a sorted list of collaborations.<a name="line.374"></a>
<FONT color="green">375</FONT>       */<a name="line.375"></a>
<FONT color="green">376</FONT>      @Test<a name="line.376"></a>
<FONT color="green">377</FONT>      public void testGetCollaborationList() {<a name="line.377"></a>
<FONT color="green">378</FONT>        List&lt;Collaboration&gt; collaborationList = this.model<a name="line.378"></a>
<FONT color="green">379</FONT>            .getCollaborationList();<a name="line.379"></a>
<FONT color="green">380</FONT>        for (int i = 0; i &lt; collaborationList.size() - 1; i++) {<a name="line.380"></a>
<FONT color="green">381</FONT>          int compare = collaborationList.get(i).getName().compareTo(<a name="line.381"></a>
<FONT color="green">382</FONT>              collaborationList.get(i + 1).getName());<a name="line.382"></a>
<FONT color="green">383</FONT>          assertTrue("Sorted Collaborations", compare &lt; 1);<a name="line.383"></a>
<FONT color="green">384</FONT>        }<a name="line.384"></a>
<FONT color="green">385</FONT>    <a name="line.385"></a>
<FONT color="green">386</FONT>        for (Collaboration c : collaborationList) {<a name="line.386"></a>
<FONT color="green">387</FONT>          assertTrue("Accurate listed Collaborations", this.model<a name="line.387"></a>
<FONT color="green">388</FONT>              .getCollaborations().containsValue(c));<a name="line.388"></a>
<FONT color="green">389</FONT>        }<a name="line.389"></a>
<FONT color="green">390</FONT>        assertEquals("Complete listed Collaborations", this.model<a name="line.390"></a>
<FONT color="green">391</FONT>            .getCollaborations().size(), collaborationList.size());<a name="line.391"></a>
<FONT color="green">392</FONT>      }<a name="line.392"></a>
<FONT color="green">393</FONT>    <a name="line.393"></a>
<FONT color="green">394</FONT>      /**<a name="line.394"></a>
<FONT color="green">395</FONT>       * Check that we can get a sorted list of organizations.<a name="line.395"></a>
<FONT color="green">396</FONT>       */<a name="line.396"></a>
<FONT color="green">397</FONT>      @Test<a name="line.397"></a>
<FONT color="green">398</FONT>      public void testGetOrganizationList() {<a name="line.398"></a>
<FONT color="green">399</FONT>        List&lt;Organization&gt; organizationList = this.model<a name="line.399"></a>
<FONT color="green">400</FONT>            .getOrganizationList();<a name="line.400"></a>
<FONT color="green">401</FONT>        for (int i = 0; i &lt; organizationList.size() - 1; i++) {<a name="line.401"></a>
<FONT color="green">402</FONT>          int compare = organizationList.get(i).getName().compareTo(<a name="line.402"></a>
<FONT color="green">403</FONT>              organizationList.get(i + 1).getName());<a name="line.403"></a>
<FONT color="green">404</FONT>          assertTrue("Sorted Organizations", compare &lt; 1);<a name="line.404"></a>
<FONT color="green">405</FONT>        }<a name="line.405"></a>
<FONT color="green">406</FONT>    <a name="line.406"></a>
<FONT color="green">407</FONT>        for (Organization c : organizationList) {<a name="line.407"></a>
<FONT color="green">408</FONT>          assertTrue("Accurate listed Organizations", this.model<a name="line.408"></a>
<FONT color="green">409</FONT>              .getOrganizations().containsValue(c));<a name="line.409"></a>
<FONT color="green">410</FONT>        }<a name="line.410"></a>
<FONT color="green">411</FONT>        assertEquals("Complete listed Organizations", this.model<a name="line.411"></a>
<FONT color="green">412</FONT>            .getOrganizations().size(), organizationList.size());<a name="line.412"></a>
<FONT color="green">413</FONT>      }<a name="line.413"></a>
<FONT color="green">414</FONT>    <a name="line.414"></a>
<FONT color="green">415</FONT>      /**<a name="line.415"></a>
<FONT color="green">416</FONT>       * Check that we can get a sorted list of researchers.<a name="line.416"></a>
<FONT color="green">417</FONT>       */<a name="line.417"></a>
<FONT color="green">418</FONT>      @Test<a name="line.418"></a>
<FONT color="green">419</FONT>      public void testGetResearcherList() {<a name="line.419"></a>
<FONT color="green">420</FONT>        List&lt;Researcher&gt; researcherList = this.model.getResearcherList();<a name="line.420"></a>
<FONT color="green">421</FONT>        for (int i = 0; i &lt; researcherList.size() - 1; i++) {<a name="line.421"></a>
<FONT color="green">422</FONT>          int compare = researcherList.get(i).getName().compareTo(<a name="line.422"></a>
<FONT color="green">423</FONT>              researcherList.get(i + 1).getName());<a name="line.423"></a>
<FONT color="green">424</FONT>          assertTrue("Sorted Researchers", compare &lt; 1);<a name="line.424"></a>
<FONT color="green">425</FONT>        }<a name="line.425"></a>
<FONT color="green">426</FONT>    <a name="line.426"></a>
<FONT color="green">427</FONT>        for (Researcher c : researcherList) {<a name="line.427"></a>
<FONT color="green">428</FONT>          assertTrue("Accurate listed Researchers", this.model<a name="line.428"></a>
<FONT color="green">429</FONT>              .getResearchers().containsValue(c));<a name="line.429"></a>
<FONT color="green">430</FONT>        }<a name="line.430"></a>
<FONT color="green">431</FONT>        assertEquals("Complete listed Researchers", this.model<a name="line.431"></a>
<FONT color="green">432</FONT>            .getResearchers().size(), researcherList.size());<a name="line.432"></a>
<FONT color="green">433</FONT>      }<a name="line.433"></a>
<FONT color="green">434</FONT>    <a name="line.434"></a>
<FONT color="green">435</FONT>    //  /**<a name="line.435"></a>
<FONT color="green">436</FONT>    //   * Test the reference completions.<a name="line.436"></a>
<FONT color="green">437</FONT>    //   * <a name="line.437"></a>
<FONT color="green">438</FONT>    //   * @throws IOException on bad data<a name="line.438"></a>
<FONT color="green">439</FONT>    //   * @throws JAXBException on parser error<a name="line.439"></a>
<FONT color="green">440</FONT>    //   */<a name="line.440"></a>
<FONT color="green">441</FONT>    //  @Test<a name="line.441"></a>
<FONT color="green">442</FONT>    //  public void testCompletion() throws IOException, JAXBException {<a name="line.442"></a>
<FONT color="green">443</FONT>    //    this.model.setCollaborationsFile("collaborations.completion.xml");<a name="line.443"></a>
<FONT color="green">444</FONT>    //    this.model.setOrganizationsFile( "organizations.completion.xml");<a name="line.444"></a>
<FONT color="green">445</FONT>    //    this.model.setResearchersFile("researchers.completion.xml");<a name="line.445"></a>
<FONT color="green">446</FONT>    //<a name="line.446"></a>
<FONT color="green">447</FONT>    //    this.model.getCollaborations().get(COLLAB_ID)<a name="line.447"></a>
<FONT color="green">448</FONT>    //        .getCollaboratingOrganizations().getCollaboratingOrganization()<a name="line.448"></a>
<FONT color="green">449</FONT>    //        .add(FAKE_NAME + "org1");<a name="line.449"></a>
<FONT color="green">450</FONT>    //<a name="line.450"></a>
<FONT color="green">451</FONT>    //    this.model.getOrganizations().get(ORG_ID)<a name="line.451"></a>
<FONT color="green">452</FONT>    //        .getAffiliatedResearchers().getAffiliatedResearcher().add(<a name="line.452"></a>
<FONT color="green">453</FONT>    //            FAKE_NAME + "researcher");<a name="line.453"></a>
<FONT color="green">454</FONT>    //<a name="line.454"></a>
<FONT color="green">455</FONT>    //    this.model.getResearchers().get(RESEARCHER_ID).setOrganization(<a name="line.455"></a>
<FONT color="green">456</FONT>    //        FAKE_NAME + "org2");<a name="line.456"></a>
<FONT color="green">457</FONT>    //<a name="line.457"></a>
<FONT color="green">458</FONT>    //    this.model.save();<a name="line.458"></a>
<FONT color="green">459</FONT>    //    this.model.load();<a name="line.459"></a>
<FONT color="green">460</FONT>    ////<a name="line.460"></a>
<FONT color="green">461</FONT>    ////    assertTrue("Completed org", this.model.getOrganizations()<a name="line.461"></a>
<FONT color="green">462</FONT>    ////        .containsKey(new Id(FAKE_NAME + "org1")));<a name="line.462"></a>
<FONT color="green">463</FONT>    ////    assertFalse("Org setting overrides researcher", this.model<a name="line.463"></a>
<FONT color="green">464</FONT>    ////        .getOrganizations().containsKey(new Id(FAKE_NAME + "org2")));<a name="line.464"></a>
<FONT color="green">465</FONT>    ////    assertEquals("Completed researcher", this.model.getOrganizations()<a name="line.465"></a>
<FONT color="green">466</FONT>    ////        .get(ORG_ID).getName(), this.model.getResearchers().get(<a name="line.466"></a>
<FONT color="green">467</FONT>    ////        new Id(FAKE_NAME + "researcher")).getOrganization());<a name="line.467"></a>
<FONT color="green">468</FONT>    //  }<a name="line.468"></a>
<FONT color="green">469</FONT>    }<a name="line.469"></a>




























































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